PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC19496_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 87aa    MW: 9869.39 Da    PI: 8.784
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC19496_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.43.9e-113883655
                 HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                 +++Er RR ri  ++ +L+el+P+ +        s ae+L +A e+Ik Lq
  RrC19496_p1 38 SIAERDRRTRISGKLKKLQELVPNiD-----NQTSYAEMLDLAAEHIKGLQ 83
                 689*********************55.....789****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.4913282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-133586IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.44E-83687No hitNo description
Gene3DG3DSA:4.10.280.101.6E-113787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-83883IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-73887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MPQTSLEMAR MESLMNIPEG SVPCRVRAKR GCATHPRSIA ERDRRTRISG KLKKLQELVP  60
NIDNQTSYAE MLDLAAEHIK GLQHEVE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142170.15e-57PREDICTED: transcription factor bHLH129-like isoform X1
RefseqXP_009142171.15e-57PREDICTED: transcription factor bHLH129-like isoform X1
RefseqXP_009142172.15e-57PREDICTED: transcription factor bHLH129-like isoform X1
SwissprotQ9ZW811e-50BH129_ARATH; Transcription factor bHLH129
TrEMBLA0A078JUQ87e-58A0A078JUQ8_BRANA; BnaCnng67160D protein
TrEMBLM4F9G93e-57M4F9G9_BRARP; Uncharacterized protein
STRINGBra037732.1-P7e-57(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103291833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.18e-52bHLH family protein